SpecModel
dcmspec.spec_model.SpecModel
Represent a hierarchical information model from any table of DICOM documents.
This class holds the DICOM specification model, structured into a hierarchical tree of DICOM components such as Data Elements, UIDs, Attributes, and others.
The model contains two main parts
- metadata: a node holding table and document metadata
- content: a node holding the hierarchical content tree
The model can be filtered.
Source code in src/dcmspec/spec_model.py
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__init__(metadata, content, logger=None)
Initialize the SpecModel.
Sets up the logger and initializes the specification model.
PARAMETER | DESCRIPTION |
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metadata
|
Node holding table and document metadata, such as headers, version, and table ID.
TYPE:
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content
|
Node holding the hierarchical content tree of the DICOM specification.
TYPE:
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logger
|
A pre-configured logger instance to use. If None, a default logger will be created.
TYPE:
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Source code in src/dcmspec/spec_model.py
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exclude_titles()
Remove nodes corresponding to title rows from the content tree.
Title rows are typically found in some DICOM tables and represent section headers rather than actual data elements (such as Module titles in PS3.4). This method traverses the content tree and removes any node identified as a title, cleaning up the model for further processing.
The method operates on the content tree and does not affect the metadata node.
RETURNS | DESCRIPTION |
---|---|
None
|
None |
Source code in src/dcmspec/spec_model.py
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filter_required(type_attr_name, keep=None, remove=None)
Remove nodes that are considered optional according to DICOM requirements.
This method traverses the content tree and removes nodes whose requirement (e.g., "Type", "Matching", or "Return Key") indicates that they are optional. Nodes with conditional or required types (e.g., "1", "1C", "2", "2C") are retained. The method can be customized by specifying which types to keep or remove.
Additionally, for nodes representing Sequences (node names containing "_sequence"), this method removes all subelements if the sequence itself is not required or can be empty (e.g., type "3", "2", "2C", "-", "O", or "Not allowed").
PARAMETER | DESCRIPTION |
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type_attr_name
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Name of the node attribute holding the optionality requirement, for example "Type" of an attribute, "Matching", or "Return Key".
TYPE:
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keep
|
List of type values to keep (default: ["1", "1C", "2", "2C"]).
TYPE:
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remove
|
List of type values to remove (default: ["3"]).
TYPE:
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RETURNS | DESCRIPTION |
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None
|
None |
Source code in src/dcmspec/spec_model.py
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merge_matching_node(other, match_by='name', attribute_name=None, merge_attrs=None)
Merge two SpecModel trees by matching nodes at any level using a single key (name or attribute).
For each node in the current model, this method finds a matching node in the other model using either the node's name (if match_by="name") or a specified attribute (if match_by="attribute"). If a match is found, the specified attributes from the other model's node are merged into the current node.
This is useful for enrichment scenarios, such as adding VR/VM/Keyword from the Part 6 dictionary to a Part 3 module, where nodes are matched by a unique attribute like elem_tag.
- Matching is performed globally (not by path): any node in the current model is matched to any node in the other model with the same key value, regardless of their position in the tree.
- It is expected that there is only one matching node per key in the other model.
- If multiple nodes in the other model have the same key, a warning is logged and only the last one found in pre-order traversal is used for merging.
Example use cases
- Enrich a PS3.3 module attribute specification with VR/VM from the PS3.6 data elements dictionary.
- Merge any two models where a unique key (name or attribute) can be used for node correspondence.
PARAMETER | DESCRIPTION |
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other
|
The other model to merge with the current model.
TYPE:
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match_by
|
"name" to match by node.name (stripped of leading '>' and whitespace), or "attribute" to match by a specific attribute value.
TYPE:
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attribute_name
|
The attribute name to use for matching if match_by="attribute".
TYPE:
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merge_attrs
|
List of attribute names to merge from the other model's node.
TYPE:
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RETURNS | DESCRIPTION |
---|---|
SpecModel
|
A new merged SpecModel with attributes from the other model merged in.
TYPE:
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RAISES | DESCRIPTION |
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ValueError
|
If match_by is invalid or attribute_name is missing when required. |
Source code in src/dcmspec/spec_model.py
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merge_matching_path(other, match_by='name', attribute_name=None, merge_attrs=None, ignore_module_level=False)
Merge with another SpecModel, producing a new model with attributes merged for nodes with matching paths.
The path for matching is constructed at each level using either the node's name
(if match_by="name") or a specified attribute (if match_by="attribute" and attribute_name is given).
Only nodes whose full path matches (by the chosen key) will be merged.
This method is useful for combining DICOM specification models from different parts of the standard. For example, it can be used to merge a PS3.3 model of a normalized IOD specification with a PS3.4 model of a SOP class specification.
PARAMETER | DESCRIPTION |
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other
|
The other model to merge with the current model.
TYPE:
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match_by
|
"name" to match by node.name path, "attribute" to match by a specific attribute path.
TYPE:
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attribute_name
|
The attribute name to use for matching if match_by="attribute".
TYPE:
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merge_attrs
|
List of attribute names to merge from the other model's node.
TYPE:
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ignore_module_level
|
If True, skip the module level in the path for matching.
TYPE:
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RETURNS | DESCRIPTION |
---|---|
SpecModel
|
A new merged SpecModel.
TYPE:
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Source code in src/dcmspec/spec_model.py
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